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LOC4330996 serine carboxypeptidase 24 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330996, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4330996
Gene description
serine carboxypeptidase 24
Locus tag
OSNPB_020794500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1695_H09.2-1; OJ1695_H09.2-2; OJ1695_H09.2-3
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Genomic context

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See LOC4330996 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (34265632..34271908)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (33769290..33776453)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4330994 Neighboring gene translation initiation factor IF3-4, chloroplastic Neighboring gene cytochrome c oxidase copper chaperone 1 Neighboring gene leucine aminopeptidase 2, chloroplastic-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type carboxypeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brassinosteroid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine carboxypeptidase 24
Names
Os02g0794500
P0700F06.34-1
P0700F06.34-2
P0700F06.34-3
putative carboxypeptidase D
putative serine carboxypeptidase II

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    34265632..34271908
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015767525.3 → XP_015623011.1  serine carboxypeptidase 24 isoform X1

    UniProtKB/TrEMBL
    A0A0N7KG89, A2XAI4, Q6K673, Q6K900
    Conserved Domains (1) summary
    pfam00450
    Location:41 → 467
    Peptidase_S10; Serine carboxypeptidase

  2. XM_015767526.3 → XP_015623012.1  serine carboxypeptidase 24 isoform X2

    UniProtKB/TrEMBL
    A2XAI4, Q6K671, Q6K8Z8
    Conserved Domains (1) summary
    pfam00450
    Location:4 → 379
    Peptidase_S10; Serine carboxypeptidase
Nucleotide Protein
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