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LOC4331078 wall-associated receptor kinase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331078, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4331078
Gene description
wall-associated receptor kinase 1
Locus tag
OSNPB_020807200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1520_C09.2
Expression
Broad expression in roots before flowering (RPKM 9.4), milk grains (RPKM 3.4) and 6 other tissues See more
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Genomic context

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See LOC4331078 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (34979814..34982705, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (34483089..34486099, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene long chain base biosynthesis protein 1b-like Neighboring gene phosphoenolpyruvate carboxylase kinase 2 Neighboring gene probable starch synthase 4, chloroplastic/amyloplastic Neighboring gene uncharacterized LOC4331079 Neighboring gene uncharacterized LOC136355033

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables polysaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell surface receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
wall-associated receptor kinase 1
Names
Os02g0807200
putative wall-associated serine/threonine kinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    34979814..34982705 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770715.3 → XP_015626201.2  wall-associated receptor kinase 1 isoform X2

    UniProtKB/TrEMBL
    A3ACH4, Q6K9B5, Q948H3
    Conserved Domains (3) summary
    cd00054
    Location:371 → 404
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd14066
    Location:505 → 770
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    pfam13947
    Location:85 → 192
    GUB_WAK_bind; Wall-associated receptor kinase galacturonan-binding

  2. XM_026022975.2 → XP_025878760.1  wall-associated receptor kinase 1 isoform X1

    UniProtKB/TrEMBL
    A0A0P0VR11, A3ACH4, Q6K9B5, Q948H3
    Conserved Domains (3) summary
    cd00054
    Location:371 → 404
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd14066
    Location:535 → 800
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    pfam13947
    Location:85 → 192
    GUB_WAK_bind; Wall-associated receptor kinase galacturonan-binding
Nucleotide Protein
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