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LOC4331117 very-long-chain aldehyde decarbonylase GL1-6-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331117, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4331117
Gene description
very-long-chain aldehyde decarbonylase GL1-6-like
Locus tag
OSNPB_020814200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1293_E04.17
Expression
Biased expression in flower buds (RPKM 11.7), flowers (RPKM 3.2) and 1 other tissue See more
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Genomic context

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See LOC4331117 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (35388240..35392453, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (34889658..34893889, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4331115 Neighboring gene phospholipid--sterol O-acyltransferase Neighboring gene uncharacterized LOC4331118 Neighboring gene cytochrome c1 2, heme protein, mitochondrial Neighboring gene protein PHOSPHATE STARVATION RESPONSE 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables C-4 methylsterol oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sterol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
very-long-chain aldehyde decarbonylase GL1-6-like
Names
OSJNBa0053L11.39
Os02g0814200
protein ECERIFERUM 1
putative CER1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    35388240..35392453 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015769252.3 → XP_015624738.1  very-long-chain aldehyde decarbonylase GL1-6-like

    UniProtKB/Swiss-Prot
    A2XAY1, Q6K3D8
    Conserved Domains (3) summary
    PLN02869
    Location:1 → 618
    PLN02869; fatty aldehyde decarbonylase
    pfam04116
    Location:133 → 273
    FA_hydroxylase; Fatty acid hydroxylase superfamily
    pfam12076
    Location:455 → 618
    Wax2_C; WAX2 C-terminal domain
Nucleotide Protein
Heading Accession and Version

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