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LOC4331162 OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 12 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331162, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4331162
Gene description
OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 12
Locus tag
OSNPB_020819500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1202_E07.21-1; OJ1202_E07.21-2
Expression
Ubiquitous expression in roots after flowering (RPKM 66.5), leaves after flowering (RPKM 53.1) and 6 other tissues See more
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Genomic context

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See LOC4331162 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (35677849..35682877, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35179129..35184150, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene pumilio homolog 1 Neighboring gene P-loop NTPase domain-containing protein LPA1-like Neighboring gene serine/threonine-protein kinase PCRK1 Neighboring gene uncharacterized protein C24H6.02c

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 12
Names
OTU domain-containing protein 5-A
OTU-like cysteine protease-like
Os02g0819500
P0474F11.2-1
P0474F11.2-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    35677849..35682877 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015769938.3 → XP_015625424.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 12

    UniProtKB/TrEMBL
    B9F4I9, Q6K722, Q6K9R0
    Conserved Domains (1) summary
    cl19932
    Location:156 → 241
    OTU; OTU-like cysteine protease

  2. XM_015769937.3 → XP_015625423.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 12

    UniProtKB/TrEMBL
    B9F4I9, Q6K722, Q6K9R0
    Conserved Domains (1) summary
    cl19932
    Location:156 → 241
    OTU; OTU-like cysteine protease

RNA

  1. XR_010739304.1 RNA Sequence

  2. XR_001543377.3 RNA Sequence

Nucleotide Protein
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