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LOC4331188 phosphatidylinositol 4-phosphate 5-kinase 9 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331188, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4331188
Gene description
phosphatidylinositol 4-phosphate 5-kinase 9
Locus tag
OSNPB_020822500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1119_A01.22-1
Expression
Ubiquitous expression in roots after flowering (RPKM 78.5), leaves after flowering (RPKM 62.6) and 6 other tissues See more
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Genomic context

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See LOC4331188 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (35806097..35812283, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35307399..35313631, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene protein BTR1 Neighboring gene NAC domain-containing protein 78 Neighboring gene large ribosomal subunit protein bL9c Neighboring gene 4-coumarate--CoA ligase-like 3 Neighboring gene acyl-CoA-binding domain-containing protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol-4-phosphate 5-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositol 4-phosphate 5-kinase 9
Names
Os02g0822500
putative phosphatidylinositol-4-phosphate 5-kinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    35806097..35812283 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015769202.3 → XP_015624688.1  phosphatidylinositol 4-phosphate 5-kinase 9 isoform X1

    UniProtKB/TrEMBL
    A2XB57, A3ACT5, Q6KA01
    Conserved Domains (1) summary
    PLN03185
    Location:56 → 821
    PLN03185; phosphatidylinositol phosphate kinase; Provisional

  2. XM_066307399.1 → XP_066163496.1  phosphatidylinositol 4-phosphate 5-kinase 9 isoform X2

    UniProtKB/TrEMBL
    A2XB57
Nucleotide Protein
Heading Accession and Version

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Research Materials