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LOC4331207 V-type proton ATPase subunit F [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331207, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4331207
Gene description
V-type proton ATPase subunit F
Locus tag
OSNPB_020824700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1063_D06.15
Expression
Ubiquitous expression in flowers (RPKM 40.5), flower buds (RPKM 39.8) and 6 other tissues See more
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Genomic context

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See LOC4331207 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (35926285..35929319)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35427539..35430614)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene remorin Neighboring gene uncharacterized LOC107277231 Neighboring gene uncharacterized LOC107280115 Neighboring gene uncharacterized LOC4331208

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proton-transporting V-type ATPase, V1 domain IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
V-type proton ATPase subunit F
Names
Os02g0824700
putative Vacuolar ATP synthase subunit F

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    35926285..35929319
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015767980.3 → XP_015623466.1  V-type proton ATPase subunit F

    UniProtKB/TrEMBL
    A2XQ09, A3AQK0, B9F4L0, Q6KAA4
    Conserved Domains (1) summary
    cl00632
    Location:14 → 122
    ATP-synt_F; ATP synthase (F/14-kDa) subunit
Nucleotide Protein
Heading Accession and Version

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