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LOC4331236 replication protein A 32 kDa subunit A-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331236, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4331236
Gene description
replication protein A 32 kDa subunit A-like
Locus tag
OSNPB_020829100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
RPA2A; RPA32A; OsRPA32; OsRPA32A; OsJ_08977; OsRPA32-1; OJ1124_D06.4
Expression
Biased expression in flower buds (RPKM 9.0), flowers (RPKM 3.9) and 2 other tissues See more
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Genomic context

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See LOC4331236 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (36138722..36141406, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35639825..35642608, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene lysine-specific demethylase JMJ27 Neighboring gene uncharacterized LOC112937874 Neighboring gene tricalbin-3 Neighboring gene uncharacterized LOC136355391

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA replication factor A complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in chromosome, telomeric region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in site of double-strand break IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
replication protein A 32 kDa subunit A
Names
LOC_Os02g58220
Replication factor A protein 2A
Replication protein A 2A
replication protein A 30kDa
replication protein A2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001417106.1 → NP_001404035.1  replication protein A 32 kDa subunit A

    Status: VALIDATED

    Source sequence(s)
    AK103235, AU030219, CI620421
    UniProtKB/Swiss-Prot
    A0A0P0VRK3, B9F4N4, Q6K9U2, Q9AVM2, Q9FY12

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    36138722..36141406 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6K9U2.1 GenPept UniProtKB/Swiss-Prot:Q6K9U2

Gene LinkOut

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Molecular Biology Databases
Research Materials