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LOC4331362 non-specific lipid-transfer protein 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331362, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4331362
Gene description
non-specific lipid-transfer protein 2-like
Locus tag
OSNPB_030111300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
LTP-2; nsLTP2; OsJ_008807
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Genomic context

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See LOC4331362 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (659528..660335, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (652199..652803, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene folylpolyglutamate synthase Neighboring gene remorin Neighboring gene heavy metal-associated isoprenylated plant protein 39 Neighboring gene uncharacterized LOC4331364

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A novel biological role for nsLTP2 from Oriza sativa: Potential incorporation with anticancer agents, nucleosides and their analogues. Tousheh M, et al. Comput Biol Chem, 2015 Oct. PMID 26001286
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A novel biological role for nsLTP2 from Oryza sativa: potential incorporation with anti-cancer agents, nucleosides, and their analogues
    Title: A novel biological role for nsLTP2 from Oriza sativa: Potential incorporation with anticancer agents, nucleosides and their analogues.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
non-specific lipid-transfer protein 2
Names
7 kDa lipid transfer protein
LOC_Os03g02050

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001417159.1 → NP_001404088.1  non-specific lipid-transfer protein 2 precursor

    Status: VALIDATED

    Source sequence(s)
    CI154957, CI419198, CI486333, CI692114
    UniProtKB/Swiss-Prot
    A3ADD5, B7E7J9, Q10ST8
    UniProtKB/TrEMBL
    T2B4Q5

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    659528..660335 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q10ST8.1 GenPept UniProtKB/Swiss-Prot:Q10ST8

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials