U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4331414 UDP-galactose/UDP-glucose transporter 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331414, updated on 16-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4331414
Gene description
UDP-galactose/UDP-glucose transporter 2
Locus tag
OSNPB_030118200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 4.1), leaves before flowering (RPKM 3.3) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4331414 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (998702..1002324)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (991077..994701)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein-ribulosamine 3-kinase, chloroplastic-like Neighboring gene ethylene-responsive transcription factor ERF027 Neighboring gene uncharacterized LOC4331413 Neighboring gene cyclin-dependent kinase A-1-like Neighboring gene uncharacterized LOC9271805 Neighboring gene uncharacterized LOC9267944 Neighboring gene dihydrodipicolinate reductase-like protein CRR1, chloroplastic

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
UDP-galactose/UDP-glucose transporter 2
Names
Os03g0118200

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    998702..1002324
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015773619.3 → XP_015629105.1  UDP-galactose/UDP-glucose transporter 2

    UniProtKB/TrEMBL
    Q0DVQ3, Q10SL9
    Conserved Domains (1) summary
    pfam08449
    Location:24 → 313
    UAA; UAA transporter family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials