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LOC4331453 uncharacterized LOC4331453 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331453, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4331453
Gene description
uncharacterized LOC4331453
Locus tag
OSNPB_030124100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in flowers (RPKM 3.3), flower buds (RPKM 0.6) and 1 other tissue See more
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Genomic context

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See LOC4331453 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (1410530..1412843)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (1402785..1405029)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4331451 Neighboring gene homeobox protein BEL1 homolog Neighboring gene probable receptor-like protein kinase At5g24010 Neighboring gene probable receptor-like protein kinase At5g24010

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4331453
Names
Os03g0124100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    1410530..1412843
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015775758.3 → XP_015631244.2  uncharacterized protein LOC4331453 isoform X2

    UniProtKB/TrEMBL
    Q0DVL5, Q10SF6
    Conserved Domains (2) summary
    pfam04646
    Location:234 → 490
    DUF604; Protein of unknown function, DUF604
    cl21608
    Location:98 → 299
    Galactosyl_T; Galactosyltransferase

  2. XM_015775757.3 → XP_015631243.2  uncharacterized protein LOC4331453 isoform X1

    UniProtKB/TrEMBL
    Q0DVL5, Q10SF6
    Conserved Domains (2) summary
    pfam04646
    Location:234 → 490
    DUF604; Protein of unknown function, DUF604
    cl21608
    Location:98 → 299
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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