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LOC4331650 4-coumarate--CoA ligase-like 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331650, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4331650
Gene description
4-coumarate--CoA ligase-like 1
Locus tag
OSNPB_030152400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
4CLL1
Expression
Ubiquitous expression in roots before flowering (RPKM 35.0), leaves after flowering (RPKM 32.6) and 6 other tissues See more
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Genomic context

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See LOC4331650 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (2891953..2896835, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (2883038..2887917, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene transcription factor-like protein DPB Neighboring gene peroxidase 44 Neighboring gene uncharacterized LOC4331651 Neighboring gene putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables CoA-ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
4-coumarate--CoA ligase-like 1
Names
LOC_Os03g05780
NP_001404146.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001417217.1 → NP_001404146.1  4-coumarate--CoA ligase-like 1

    Status: VALIDATED

    Source sequence(s)
    AK242087, CI136335, CI472712, CI699784, CV722651
    UniProtKB/Swiss-Prot
    B7F991, Q0DV32, Q10RN5
    UniProtKB/TrEMBL
    B8AND5

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    2891953..2896835 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0DV32.2 GenPept UniProtKB/Swiss-Prot:Q0DV32

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials