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LOC4331651 uncharacterized LOC4331651 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331651, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4331651
Gene description
uncharacterized LOC4331651
Locus tag
OSNPB_030152600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots after flowering (RPKM 24.0), leaves after flowering (RPKM 14.5) and 5 other tissues See more
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Genomic context

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See LOC4331651 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (2906426..2909276, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (2897476..2900325, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene peroxidase 44 Neighboring gene 4-coumarate--CoA ligase-like 1 Neighboring gene putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic Neighboring gene uncharacterized LOC4331653

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC4331651
Names
Os03g0152600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    2906426..2909276 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015774396.3 → XP_015629882.1  uncharacterized protein LOC4331651

    UniProtKB/TrEMBL
    B8AND6, Q0DV31, Q10RN3
Nucleotide Protein
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