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LOC4331688 probable serine/threonine-protein kinase PBL16 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331688, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4331688
Gene description
probable serine/threonine-protein kinase PBL16
Locus tag
OSNPB_030159100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4331688 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (3174239..3178028)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (3165084..3168841)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene YTH domain-containing protein ECT4 Neighboring gene subtilisin-like protease SBT3.18 Neighboring gene pentatricopeptide repeat-containing protein At3g28660 Neighboring gene uncharacterized LOC4331689 Neighboring gene transcription repressor OFP12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable serine/threonine-protein kinase PBL16
Names
Os03g0159100
probable receptor-like protein kinase At5g56460

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    3174239..3178028
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066308588.1 → XP_066164685.1  probable serine/threonine-protein kinase PBL16 isoform X2

    UniProtKB/TrEMBL
    A0A8J8YDY9, B8ANV0, B9FBF2, Q0DUZ7, Q10RH3

  2. XM_015774392.3 → XP_015629878.1  probable serine/threonine-protein kinase PBL16 isoform X1

    UniProtKB/TrEMBL
    Q8H8B3
    Conserved Domains (2) summary
    smart00221
    Location:132 → 410
    STYKc; Protein kinase; unclassified specificity
    cd14066
    Location:135 → 413
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
Nucleotide Protein
Heading Accession and Version

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