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LOC4331822 serine/threonine-protein kinase RIPK [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331822, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4331822
Gene description
serine/threonine-protein kinase RIPK
Locus tag
OSNPB_030179400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves after flowering (RPKM 17.0), roots after flowering (RPKM 5.3) and 5 other tissues See more
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Genomic context

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See LOC4331822 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (4183893..4189638)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (4173183..4179130)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9272394 Neighboring gene uncharacterized LOC136355596 Neighboring gene protein LURP-one-related 6 Neighboring gene uncharacterized LOC107280435 Neighboring gene probable lipoxygenase 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine-protein kinase RIPK
Names
Os03g0179400
serine/threonine-protein kinase At5g01020

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    4183893..4189638
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015775390.3 → XP_015630876.1  serine/threonine-protein kinase RIPK

    UniProtKB/TrEMBL
    Q0DUL8, Q10QY0, Q8H019
    Conserved Domains (1) summary
    cl21453
    Location:98 → 372
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version

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