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LOC4331910 ethylene-responsive transcription factor RAP2-13 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331910, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4331910
Gene description
ethylene-responsive transcription factor RAP2-13
Locus tag
OSNPB_030191900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4331910 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (4791652..4792975, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (4780247..4781580, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene putative pumilio homolog 7, chloroplastic Neighboring gene NDR1/HIN1-like protein 13 Neighboring gene serine carboxypeptidase 1 Neighboring gene uncharacterized LOC4331911 Neighboring gene protein SOSEKI 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ethylene-responsive transcription factor RAP2-13
Names
Os03g0191900

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    4791652..4792975 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015773644.3 → XP_015629130.1  ethylene-responsive transcription factor RAP2-13

    UniProtKB/TrEMBL
    A2XDF6, Q0DUD9, Q10QM1
    Conserved Domains (1) summary
    smart00380
    Location:112 → 171
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein
Heading Accession and Version

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