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LOC4331918 ubiquitin carboxyl-terminal hydrolase 26-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331918, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4331918
Gene description
ubiquitin carboxyl-terminal hydrolase 26-like
Locus tag
OSNPB_030192800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 14.7), flower buds (RPKM 14.4) and 6 other tissues See more
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Genomic context

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See LOC4331918 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (4847549..4855713)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (4836134..4844303)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene non-specific lipid-transfer protein-like protein At2g13820 Neighboring gene inositol-3-phosphate synthase 1-like Neighboring gene scarecrow-like protein 21 Neighboring gene putative yippee-like protein Os10g0369500

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 26-like
Names
Os03g0192800
Os03g0192900
ubiquitin carboxyl-terminal hydrolase 26

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    4847549..4855713
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026024068.2 → XP_025879853.1  ubiquitin carboxyl-terminal hydrolase 26-like isoform X2

    Conserved Domains (4) summary
    pfam06337
    Location:392 → 455
    DUSP; DUSP domain
    cl00155
    Location:726 → 815
    UBQ; Ubiquitin-like proteins
    cl02553
    Location:1 → 206
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    cl12116
    Location:278 → 343
    DUSP; DUSP domain

  2. XM_066308686.1 → XP_066164783.1  ubiquitin carboxyl-terminal hydrolase 26-like isoform X1

    UniProtKB/Swiss-Prot
    A3AF13, Q0DUD1, Q10QK5
    UniProtKB/TrEMBL
    B9F5M9

  3. XM_015775370.3 → XP_015630856.1  ubiquitin carboxyl-terminal hydrolase 26-like isoform X1

    UniProtKB/Swiss-Prot
    A3AF13, Q0DUD1, Q10QK5
    UniProtKB/TrEMBL
    B9F5M9
    Conserved Domains (4) summary
    cd02668
    Location:107 → 444
    Peptidase_C19L; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    cd01795
    Location:960 → 1055
    Ubl_USP48; ubiquitin-like (Ubl) domain found in ubiquitin-specific-processing protease 48 (USP48) and similar proteins
    pfam06337
    Location:630 → 693
    DUSP; DUSP domain
    cl12116
    Location:516 → 581
    DUSP; DUSP domain
Nucleotide Protein
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