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LOC4332200 zinc finger protein 7 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332200, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4332200
Gene description
zinc finger protein 7
Locus tag
OSNPB_030239300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots before flowering (RPKM 9.1), leaves after flowering (RPKM 3.6) and 5 other tissues See more
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (7401544..7404203, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (7353031..7356075, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355722 Neighboring gene protein TITANIA-like Neighboring gene bZIP transcription factor 1-B Neighboring gene uncharacterized LOC107280416

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Yilmaz A, et al. Plant Physiol, 2009 Jan. PMID 18987217, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of abscisic acid-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 7
Names
C2H2 transcription factor
Os03g0239300

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    7401544..7404203 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015772868.3 → XP_015628354.1  zinc finger protein 7

    UniProtKB/TrEMBL
    A2XED3, Q0DTL9, Q10PC4
    Conserved Domains (1) summary
    pfam13912
    Location:79 → 105
    zf-C2H2_6; C2H2-type zinc finger

  2. XM_066308568.1 → XP_066164665.1  zinc finger protein 7

    UniProtKB/TrEMBL
    A2XED3, Q0DTL9, Q10PC4

  3. XM_026024157.2 → XP_025879942.1  zinc finger protein 7

    UniProtKB/TrEMBL
    A2XED3, Q0DTL9, Q10PC4
    Conserved Domains (1) summary
    pfam13912
    Location:79 → 105
    zf-C2H2_6; C2H2-type zinc finger
Nucleotide Protein
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