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LOC4332427 probable ADP-ribosylation factor GTPase-activating protein AGD6 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332427, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4332427
Gene description
probable ADP-ribosylation factor GTPase-activating protein AGD6
Locus tag
OSNPB_030278400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4332427 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (9506125..9509424, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (9455711..9458949, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 Neighboring gene THO complex subunit 4A Neighboring gene polyadenylate-binding protein 7 Neighboring gene uncharacterized LOC136355728

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A network of rice genes associated with stress response and seed development. Cooper B, et al. Proc Natl Acad Sci U S A, 2003 Apr 15. PMID 12684538, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ADP-ribosylation factor GTPase-activating protein AGD6
Names
ADP ribosylation GTPase-like protein
Os03g0278400

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    9506125..9509424 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015776968.3 → XP_015632454.1  probable ADP-ribosylation factor GTPase-activating protein AGD6

    UniProtKB/TrEMBL
    A0A8J8XGN0, A2XF58, A3AGL9, Q0DSZ8, Q10N88
    Conserved Domains (1) summary
    cd08830
    Location:5 → 119
    ArfGap_ArfGap1; Arf1 GTPase-activating protein 1
Nucleotide Protein
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