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LOC4332475 mitogen-activated protein kinase 5-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332475, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4332475
Gene description
mitogen-activated protein kinase 5-like
Locus tag
OSNPB_030285800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
MPK3; MPK5; BIMK1; MAPK2; MAPK5; OsMAP1; OsMPK3; msrmk2; OsBIMK1; OsMAPK2; OsMAPK5; OsMSRMK2; OsJ_10412
Expression
Biased expression in roots before flowering (RPKM 896.6) and flowers (RPKM 42.7) See more
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Genomic context

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Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (9898376..9901149, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (9847712..9850468, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4332473 Neighboring gene L-ascorbate peroxidase 1, cytosolic-like Neighboring gene serine/arginine-rich splicing factor RS2Z32 Neighboring gene E3 ubiquitin-protein ligase SIRP1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Isolation of novel rice (Oryza sativa L.) multiple stress responsive MAP kinase gene, OsMSRMK2, whose mRNA accumulates rapidly in response to environmental cues. Agrawal GK, et al. Biochem Biophys Res Commun, 2002 Jun 28. PMID 12074577
  2. Biochemical identification of the OsMKK6-OsMPK3 signalling pathway for chilling stress tolerance in rice. Xie G, et al. Biochem J, 2012 Apr 1. PMID 22248149
  3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. our data suggest that OsMKK6 and OsMPK3 constitute a moderately low-temperature signalling pathway and regulate cold stress tolerance in rice. [OsMPK3]
    Title: Biochemical identification of the OsMKK6-OsMPK3 signalling pathway for chilling stress tolerance in rice.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables MAP kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitogen-activated protein kinase 5
Names
Benzothiadiazole-induced MAP kinase 1
LOC_Os03g17700
MAP kinase 2
MAP kinase 5
Multiple stress-responsive MAP kinase 2
OSJNBa0013D02.9
mitogen-activated protein kinase 3
NP_001389066.1
XP_015630495.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402137.1 → NP_001389066.1  mitogen-activated protein kinase 5

    Status: VALIDATED

    Source sequence(s)
    CB675228, CB675229, CI136306, CI669672
    UniProtKB/Swiss-Prot
    A2XFC8, B7EDC7, Q0PIU7, Q10N20, Q7FNE2, Q8GZZ3, Q8S3T6, Q9AXF2, Q9FQM3, Q9FSE6

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    9898376..9901149 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015775009.3 → XP_015630495.1  mitogen-activated protein kinase 5 isoform X1

    Conserved Domains (2) summary
    smart00220
    Location:41 → 350
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cl21453
    Location:29 → 393
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q10N20.1 GenPept UniProtKB/Swiss-Prot:Q10N20

Gene LinkOut

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Molecular Biology Databases
Research Materials