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LOC4332476 serine/arginine-rich splicing factor RS2Z32 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332476, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4332476
Gene description
serine/arginine-rich splicing factor RS2Z32
Locus tag
OSNPB_030285900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4332476 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (9903426..9906694, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (9852750..9856056, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene L-ascorbate peroxidase 1, cytosolic-like Neighboring gene mitogen-activated protein kinase 5-like Neighboring gene E3 ubiquitin-protein ligase SIRP1 Neighboring gene arogenate dehydratase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/arginine-rich splicing factor RS2Z32
Names
Os03g0285900

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    9903426..9906694 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015775011.2 → XP_015630497.1  serine/arginine-rich splicing factor RS2Z32

    UniProtKB/TrEMBL
    A2XZS4, B9F7Q3, Q10N19
    Conserved Domains (2) summary
    PTZ00368
    Location:90 → 152
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    cl17169
    Location:12 → 81
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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