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LOC4332726 protein PHOSPHATE STARVATION RESPONSE 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332726, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4332726
Gene description
protein PHOSPHATE STARVATION RESPONSE 1-like
Locus tag
OSNPB_030329900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
PHR1; OsPHR1; OsJ_10705
Expression
Ubiquitous expression in leaves before flowering (RPKM 27.4), roots after flowering (RPKM 26.8) and 6 other tissues See more
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Genomic context

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See LOC4332726 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (12181298..12186440)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (12126247..12131304)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene endoglucanase 9-like Neighboring gene leucine-rich repeat receptor protein kinase HPCA1 Neighboring gene probable galacturonosyltransferase 7 Neighboring gene 2,3-bisphosphoglycerate-independent phosphoglycerate mutase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein PHOSPHATE STARVATION RESPONSE 1
Names
LOC_Os03g21240
Os03g0329900
Protein PHOSPHATE STARVATION RESPONSE 1
protein PHR1-LIKE 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001417661.1 → NP_001404590.1  protein PHOSPHATE STARVATION RESPONSE 1

    Status: VALIDATED

    Source sequence(s)
    AK063486, CI082433, CI145515, CI276720, CI755761
    UniProtKB/Swiss-Prot
    B8ANX9, Q10LZ1

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    12181298..12186440
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066308144.1 → XP_066164241.1  protein PHOSPHATE STARVATION RESPONSE 1 isoform X1

    UniProtKB/Swiss-Prot
    B8ANX9, Q10LZ1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q10LZ1.1 GenPept UniProtKB/Swiss-Prot:Q10LZ1

Gene LinkOut

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