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LOC4332800 U3 small nucleolar RNA-associated protein 14 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332800, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4332800
Gene description
U3 small nucleolar RNA-associated protein 14
Locus tag
OSNPB_030343300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 13.4), leaves after flowering (RPKM 11.1) and 6 other tissues See more
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Genomic context

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See LOC4332800 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (12843677..12848624)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (12788368..12793362)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene phylloplanin-like Neighboring gene dormancy-associated protein homolog 3 Neighboring gene blue-light photoreceptor PHR2 Neighboring gene large ribosomal subunit protein eL22z

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U3 small nucleolar RNA-associated protein 14
Names
Os03g0343300

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    12843677..12848624
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015775437.3 → XP_015630923.1  U3 small nucleolar RNA-associated protein 14

    UniProtKB/TrEMBL
    A0A8J8XEQ0, A2XGT7, A3AHT7, Q10LM2
    Conserved Domains (1) summary
    pfam04615
    Location:108 → 841
    Utp14; Utp14 protein
Nucleotide Protein
Heading Accession and Version

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