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LOC4333000 proteasome subunit alpha type-2-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333000, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4333000
Gene description
proteasome subunit alpha type-2-like
Locus tag
OSNPB_030387100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
PAB1; OsPAB1; OsJ_11088
Expression
Ubiquitous expression in flower buds (RPKM 45.7), leaves after flowering (RPKM 39.9) and 6 other tissues See more
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Genomic context

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See LOC4333000 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (15772174..15776722)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (15420135..15424720)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4332997 Neighboring gene serine carboxypeptidase 1 Neighboring gene uncharacterized LOC4332999 Neighboring gene formin-like protein 7 Neighboring gene uncharacterized LOC9271829

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Primary structural features of the 20S proteasome subunits of rice (Oryza sativa). Sassa H, et al. Gene, 2000 May 30. PMID 10854779
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in proteasomal protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proteasome core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome core complex, alpha-subunit complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
proteasome subunit alpha type-2
Names
20S proteasome alpha subunit B
20S proteasome subunit alpha-2
LOC_Os03g26970
OSJNBb0058G04.11
alpha 2 subunit of 20S proteasome
NP_001389095.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402166.1 → NP_001389095.1  proteasome subunit alpha type-2

    Status: VALIDATED

    Source sequence(s)
    CF305452, CF319267, CF319268, CI563111
    UniProtKB/Swiss-Prot
    A2YVR7, B7E2Y8, O22539, Q10KF0, Q6AVF6, Q9LSU2
    UniProtKB/TrEMBL
    B8BB87

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    15772174..15776722
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q10KF0.1 GenPept UniProtKB/Swiss-Prot:Q10KF0

Gene LinkOut

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Molecular Biology Databases
Research Materials