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LOC4333019 histone H3.3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333019, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4333019
Gene description
histone H3.3
Locus tag
OSNPB_030390600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots before flowering (RPKM 752.5), leaves before flowering (RPKM 551.2) and 6 other tissues See more
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Genomic context

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See LOC4333019 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (15998275..16000811)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (15645560..15648153)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase SAPK1-like Neighboring gene cytochrome c oxidase subunit 6b-1 Neighboring gene uric acid degradation bifunctional protein TTL Neighboring gene protein FAR1-RELATED SEQUENCE 5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone H3.3
Names
Os03g0390600
U box domain-containing protein
histone H3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    15998275..16000811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015775051.3 → XP_015630537.1  histone H3.3

    UniProtKB/Swiss-Prot
    A2XHJ3, Q0JCT1, Q71UF0, Q7F8L1, Q8SA80
    UniProtKB/TrEMBL
    A0A8J8XDW2, A3AUC6, B8AUE9, B9F8T4, D6PYM8, D9J2J6
    Conserved Domains (1) summary
    PTZ00018
    Location:1 → 136
    PTZ00018; histone H3; Provisional
Nucleotide Protein
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