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LOC4333115 COBRA-like protein 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333115, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4333115
Gene description
COBRA-like protein 2
Locus tag
OSNPB_030416300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
BC1L2; OsJ_11271
Expression
Biased expression in flowers (RPKM 3.0), flower buds (RPKM 1.1) and 2 other tissues See more
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Genomic context

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See LOC4333115 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (17718045..17722205, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (17262427..17266541, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene mitochondrial import inner membrane translocase subunit TIM17-1 Neighboring gene uncharacterized LOC107280252 Neighboring gene COBRA-like protein 5 Neighboring gene uncharacterized LOC107280421 Neighboring gene probable 6-phosphogluconolactonase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cellulose microfibril organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type cell wall cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cOBRA-like protein 2
Names
LOC_Os03g30260
OSJNBb0059G13.19
Protein BRITTLE CULM1-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001417681.1 → NP_001404610.1  cOBRA-like protein 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AK058400, AK103650, AP014959, CI622448, EG711548
    UniProtKB/Swiss-Prot
    Q10JL0, Q75IW1
    UniProtKB/TrEMBL
    B8AJS2

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    17718045..17722205 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q75IW1.1 GenPept UniProtKB/Swiss-Prot:Q75IW1

Gene LinkOut

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Molecular Biology Databases
Research Materials