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LOC4333225 probable WRKY transcription factor 4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333225, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4333225
Gene description
probable WRKY transcription factor 4
Locus tag
OSNPB_030444900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 6.3), leaves after flowering (RPKM 6.1) and 6 other tissues See more
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Genomic context

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See LOC4333225 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (19339907..19350855)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (18882103..18893365)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene extensin-like Neighboring gene uncharacterized LOC107280304 Neighboring gene LOB domain-containing protein 37

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable WRKY transcription factor 3; probable WRKY transcription factor 4
Names
Os03g0444900

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    19339907..19350855
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015777828.3 → XP_015633314.1  probable WRKY transcription factor 4 isoform X1

    UniProtKB/TrEMBL
    Q9SE29
    Conserved Domains (1) summary
    smart00774
    Location:366 → 423
    WRKY; DNA binding domain

  2. XM_015777829.3 → XP_015633315.1  probable WRKY transcription factor 4 isoform X2

    Conserved Domains (1) summary
    smart00774
    Location:200 → 255
    WRKY; DNA binding domain

  3. XM_015777832.3 → XP_015633318.1  probable WRKY transcription factor 4 isoform X5

    UniProtKB/TrEMBL
    B9GAG6

  4. XM_015777831.3 → XP_015633317.1  probable WRKY transcription factor 3 isoform X4

    UniProtKB/TrEMBL
    B9GAG6

  5. XM_026024276.2 → XP_025880061.1  probable WRKY transcription factor 4 isoform X3

    UniProtKB/TrEMBL
    B8AQ85
    Conserved Domains (1) summary
    smart00774
    Location:260 → 317
    WRKY; DNA binding domain

  6. XM_066308984.1 → XP_066165081.1  probable WRKY transcription factor 4 isoform X3

    UniProtKB/TrEMBL
    B8AQ85
Nucleotide Protein
Heading Accession and Version

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