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LOC4333427 protein ALP1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333427, updated on 2-Mar-2021

Summary

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Gene symbol
LOC4333427
Gene description
protein ALP1-like
Gene type
pseudo
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots before flowering (RPKM 10.6), roots after flowering (RPKM 7.8) and 6 other tissues See more
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Genomic context

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See LOC4333427 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (22912579..22918526, complement)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280218 Neighboring gene uncharacterized LOC4333426 Neighboring gene uncharacterized LOC107276980 Neighboring gene uncharacterized LOC4333428 Neighboring gene uncharacterized LOC4333429

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    22912579..22918526 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001544778.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials