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LOC4333430 LOB domain-containing protein 38 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333430, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4333430
Gene description
LOB domain-containing protein 38
Locus tag
OSNPB_030609500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots before flowering (RPKM 3.5), roots after flowering (RPKM 1.1) and 5 other tissues See more
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Genomic context

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See LOC4333430 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (23836356..23839585, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (22976931..22980034, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278460 Neighboring gene DNA-directed RNA polymerase III subunit rpc8-like Neighboring gene BTB/POZ domain-containing protein NPY3 Neighboring gene zinc finger protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOB domain-containing protein 38
Names
Os03g0609500

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    23836356..23839585 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015772725.3 → XP_015628211.1  LOB domain-containing protein 38

    UniProtKB/TrEMBL
    A0A0P0W049, A2XJG6, Q75HN5
    Conserved Domains (1) summary
    pfam03195
    Location:2 → 102
    LOB; Lateral organ boundaries (LOB) domain
Nucleotide Protein
Heading Accession and Version

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