U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4333604 chlorophyll(ide) b reductase NOL, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333604, updated on 17-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4333604
Gene description
chlorophyll(ide) b reductase NOL, chloroplastic-like
Locus tag
OSNPB_030654600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
NOL; NOL1; OsNOL; OsJ_11943
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4333604 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (26386732..26391795, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (25520290..25525350, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4333602 Neighboring gene myb family transcription factor PHL12-like Neighboring gene plant cysteine oxidase 3 Neighboring gene uncharacterized LOC112938254

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Rice NON-YELLOW COLORING1 is involved in light-harvesting complex II and grana degradation during leaf senescence. Kusaba M, et al. Plant Cell, 2007 Apr. PMID 17416733, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chlorophyll(ide) b reductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in PSII associated light-harvesting complex II catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chlorophyll catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
chlorophyll(ide) b reductase NOL, chloroplastic
Names
LOC_Os03g45194
OSJNBa0092N01.25
OSJNBb0023J24.13
Protein NON-YELLOW COLORING 1-LIKE
Protein NYC1-LIKE
Short-chain dehydrogenase/reductase NOL
short-chain dehydrogenase/reductase NOL1
NP_001405320.1
XP_015628273.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001418391.1 → NP_001405320.1  chlorophyll(ide) b reductase NOL, chloroplastic

    Status: VALIDATED

    Source sequence(s)
    AK287869
    UniProtKB/Swiss-Prot
    A0A0P0W0V8, Q10FV1, Q6AT49, Q84ST4
    UniProtKB/TrEMBL
    B8ANJ7

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    26386732..26391795 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015772787.3 → XP_015628273.1  chlorophyll(ide) b reductase NOL, chloroplastic isoform X1

    Conserved Domains (2) summary
    cd05233
    Location:76 → 282
    SDR_c; classical (c) SDRs
    pfam00106
    Location:75 → 271
    adh_short; short chain dehydrogenase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84ST4.1 GenPept UniProtKB/Swiss-Prot:Q84ST4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.