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LOC4333747 uncharacterized LOC4333747 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333747, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4333747
Gene description
uncharacterized LOC4333747
Locus tag
OSNPB_030685100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves before flowering (RPKM 12.0), flower buds (RPKM 4.8) and 5 other tissues See more
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Genomic context

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See LOC4333747 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (28187119..28189023)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (27314263..27316182)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9269790 Neighboring gene ferredoxin C 2, chloroplastic Neighboring gene gamma-glutamyl peptidase 3 Neighboring gene uncharacterized LOC4333749 Neighboring gene small nucleolar RNA snoR138

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4333747
Names
Os03g0685100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    28187119..28189023
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015773685.3 → XP_015629171.1  uncharacterized protein LOC4333747

    UniProtKB/TrEMBL
    A0A8I3B2V8, B9FAN0, Q0DPK0, Q10F15, Q9AUK9
    Conserved Domains (1) summary
    cd18095
    Location:179 → 330
    SpoU-like_rRNA-MTase; SAM-dependent rRNA methylase related to SpoU-TrmH
Nucleotide Protein
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