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LOC4333802 FLUCTUATING-LIGHT-ACCLIMATION protein 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333802, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4333802
Gene description
FLUCTUATING-LIGHT-ACCLIMATION protein 1, chloroplastic
Locus tag
OSNPB_030695500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves before flowering (RPKM 126.9), leaves after flowering (RPKM 104.3) and 4 other tissues See more
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Genomic context

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See LOC4333802 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (28728124..28732121)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (27854758..27858538)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene receptor protein kinase TMK1 Neighboring gene small nucleolar RNA J26 Neighboring gene proteasome subunit beta type-2-like Neighboring gene chloride channel protein CLC-d

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
FLUCTUATING-LIGHT-ACCLIMATION protein 1, chloroplastic
Names
Os03g0695500

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    28728124..28732121
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015776520.3 → XP_015632006.1  FLUCTUATING-LIGHT-ACCLIMATION protein 1, chloroplastic

    UniProtKB/TrEMBL
    A0A5S6R9W6, A2XKY7, Q0DPE9, Q10ER7, Q851E0
    Conserved Domains (1) summary
    pfam07466
    Location:215 → 398
    DUF1517; Protein of unknown function (DUF1517)
Nucleotide Protein
Heading Accession and Version

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