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LOC4333910 PHD finger protein MALE MEIOCYTE DEATH 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333910, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4333910
Gene description
PHD finger protein MALE MEIOCYTE DEATH 1
Locus tag
OSNPB_030716200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in flower buds (RPKM 3.3), flowers (RPKM 2.7) and 6 other tissues See more
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Genomic context

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See LOC4333910 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (29866641..29869998, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (28988380..28991927, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene vacuolar sorting protein 39 Neighboring gene uncharacterized LOC9270836 Neighboring gene uncharacterized LOC107277345 Neighboring gene uncharacterized LOC136355559

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
LOW QUALITY PROTEIN: PHD finger protein MALE MEIOCYTE DEATH 1
Names
Os03g0716200

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    29866641..29869998 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015773643.3 → XP_015629129.2  LOW QUALITY PROTEIN: PHD finger protein MALE MEIOCYTE DEATH 1

    UniProtKB/TrEMBL
    A0A0P0W288, A2XLE3, Q8W342
    Conserved Domains (1) summary
    cd15556
    Location:641 → 685
    PHD_MMD1_like; PHD finger found in Arabidopsis thaliana PHD finger protein MALE MEIOCYTE DEATH 1 (MMD1), PHD finger protein MALE STERILITY 1 (MS1), and similar proteins
Nucleotide Protein
Heading Accession and Version

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