LOC4333973 homeobox protein knotted-1-like 6 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4333973
Gene description: homeobox protein knotted-1-like 6
Locus tag: OSNPB_030727000
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: OSH1; Oskn1
Expression: Biased expression in flowers (RPKM 18.5), flower buds (RPKM 12.5) and 1 other tissue See more
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 3

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	3	NC_089037.1 (30477488..30487195, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	3	NC_029258.1 (29596322..29606861, complement)

Chromosome 3 - NC_089037.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Positive autoregulation of OSH1 is essential for its expression and shoot apical meristem maintenance.
Title: Positive autoregulation of a KNOX gene is essential for shoot apical meristem maintenance in rice.

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: homeobox protein knotted-1-like 6

Names: Homeobox protein OSH1; Homeobox protein knotted-1-like 1; KNOX class 1 homeodomain protein; LOC_Os03g51690; OSJNBa0013A09.5

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001402245.1 → NP_001389174.1 homeobox protein knotted-1-like 6

Status: VALIDATED

Source sequence(s)

AK107637, FJ940206

UniProtKB/Swiss-Prot

P46609, Q0DNY5, Q10DL4, Q10DL5, Q75GJ3

UniProtKB/TrEMBL

B9FBB3, D6BV17
NM_001402246.1 → NP_001389175.1 homeobox protein knotted-1-like 6

Status: VALIDATED

Source sequence(s)

CI761904, FJ940206

UniProtKB/Swiss-Prot

P46609, Q0DNY5, Q10DL4, Q10DL5, Q75GJ3

UniProtKB/TrEMBL

B9FBB3, D6BV17