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LOC4334105 PHD finger protein ING2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334105, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4334105
Gene description
PHD finger protein ING2
Locus tag
OSNPB_030748200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 22.1), leaves after flowering (RPKM 19.1) and 6 other tissues See more
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Genomic context

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See LOC4334105 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (31674426..31679172)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (30791621..30796412)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene YTH domain-containing protein ECT4 Neighboring gene NADPH-dependent aldehyde reductase-like protein, chloroplastic Neighboring gene protein NDH-DEPENDENT CYCLIC ELECTRON FLOW 5 Neighboring gene uncharacterized LOC4334107 Neighboring gene probable NAD(P)H dehydrogenase (quinone) FQR1-like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables methylated histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PHD finger protein ING2
Names
Os03g0748200

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    31674426..31679172
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015777057.3 → XP_015632543.1  PHD finger protein ING2

    UniProtKB/TrEMBL
    A2XLZ9, A3AMP3, Q0DNK8, Q10CW4
    Conserved Domains (2) summary
    COG5034
    Location:10 → 251
    TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
    cd17015
    Location:17 → 115
    ING_plant; Inhibitor of growth (ING) domain of plant inhibitor of growth proteins
Nucleotide Protein
Heading Accession and Version

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