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LOC4334120 uncharacterized LOC4334120 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334120, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4334120
Gene description
uncharacterized LOC4334120
Locus tag
OSNPB_030750100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in mature seeds (RPKM 134.0), milk grains (RPKM 21.7) and 5 other tissues See more
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Genomic context

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See LOC4334120 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (31786819..31789998, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (30903899..30907140, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene universal stress protein A-like protein Neighboring gene uncharacterized LOC136355621 Neighboring gene kinesin-like protein KIN-12G Neighboring gene AT-rich interactive domain-containing protein 1B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Hsp70 protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables Hsp90 protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4334120
Names
Os03g0750100
tetratricopeptide repeat protein 4 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    31786819..31789998 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015772300.3 → XP_015627786.1  uncharacterized protein LOC4334120

    UniProtKB/TrEMBL
    B8AJW6, Q10CT3, Q75LL1
    Conserved Domains (3) summary
    PLN03088
    Location:49 → 110
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    sd00006
    Location:32 → 62
    TPR; TPR repeat [structural motif]
    pfam18972
    Location:206 → 287
    Wheel; Cns1/TTC4 Wheel domain
Nucleotide Protein
Heading Accession and Version

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