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LOC4334125 protein STRICTOSIDINE SYNTHASE-LIKE 3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334125, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4334125
Gene description
protein STRICTOSIDINE SYNTHASE-LIKE 3
Locus tag
OSNPB_030750700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves after flowering (RPKM 54.7), flowers (RPKM 36.1) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (31810157..31812555, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (30927228..30929818, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene kinesin-like protein KIN-12G Neighboring gene AT-rich interactive domain-containing protein 1B Neighboring gene transcriptional adapter ADA2-like Neighboring gene uncharacterized LOC4334127

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables strictosidine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein STRICTOSIDINE SYNTHASE-LIKE 3
Names
Os03g0750700

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    31810157..31812555 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015777851.2 → XP_015633337.2  protein STRICTOSIDINE SYNTHASE-LIKE 3

    UniProtKB/TrEMBL
    A0A0P0W338, A3AMQ8, Q0DNI8
Nucleotide Protein
Heading Accession and Version

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