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LOC4334140 MADS-box transcription factor 14-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334140, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4334140
Gene description
MADS-box transcription factor 14-like
Locus tag
OSNPB_030752800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
AGL10; RAP1B; MADS14; FDRMADS6; OsMADS14; RMADS211; OsJ_12598; OJ1112_G08.13
Expression
Broad expression in leaves before flowering (RPKM 149.3), roots after flowering (RPKM 116.7) and 5 other tissues See more
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Genomic context

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See LOC4334140 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (31914711..31924435, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (31031710..31041644, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene senescence-specific cysteine protease SAG39 Neighboring gene uncharacterized LOC4334139 Neighboring gene MADS-box transcription factor 34-like Neighboring gene uncharacterized LOC107277591

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses. Wu F, et al. Plant J, 2017 Jan. PMID 27689766
  2. MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice. Ren D, et al. Plant Physiol, 2013 Jun. PMID 23629832, Free PMC Article
  3. OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice. Ryu CH, et al. Plant Cell Environ, 2009 Oct. PMID 19558411
  4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. MADS14 role during the development of rice florets.
    Title: The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mADS-box transcription factor 14
Names
LOC_Os03g54160
MADS box protein
MADS-box protein RMADS211
MADS-box transcription factor 14
OSJNBa0032E21.04
OSJNBa0047E24.2
Protein AGAMOUS-like 10
Protein APETALA1-like B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402269.1 → NP_001389198.1  mADS-box transcription factor 14 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AK069331, AY332478
    UniProtKB/Swiss-Prot
    B9FBV1, Q10CQ1, Q10CQ2
    UniProtKB/TrEMBL
    B8AJY2, D3U2G7

  2. NM_001402270.1 → NP_001389199.1  mADS-box transcription factor 14 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK069331, AY551916

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    31914711..31924435 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q10CQ1.2 GenPept UniProtKB/Swiss-Prot:Q10CQ1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.