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LOC4334167 UDP-glycosyltransferase 83A1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334167, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4334167
Gene description
UDP-glycosyltransferase 83A1
Locus tag
OSNPB_030757600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots before flowering (RPKM 3.8), roots after flowering (RPKM 3.2) and 6 other tissues See more
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Genomic context

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See LOC4334167 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (32273120..32274771)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (31302714..31306307)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene UDP-glycosyltransferase 83A1 Neighboring gene uncharacterized LOC107277532 Neighboring gene UDP-glycosyltransferase 83A1 Neighboring gene UDP-glucose 6-dehydrogenase 3-like Neighboring gene probable WRKY transcription factor 57

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-glycosyltransferase 83A1
Names
Os03g0757600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    32273120..32274771
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015775388.3 → XP_015630874.1  UDP-glycosyltransferase 83A1

    UniProtKB/TrEMBL
    A0A0P0W3N1, A2XM58, A3AMV3, Q9AUV4
    Conserved Domains (1) summary
    cl10013
    Location:9 → 446
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
Nucleotide Protein
Heading Accession and Version

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