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LOC4334173 uncharacterized LOC4334173 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334173, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4334173
Gene description
uncharacterized LOC4334173
Locus tag
OSNPB_030758400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 21.0), mature seeds (RPKM 16.5) and 6 other tissues See more
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Genomic context

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See LOC4334173 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (32325163..32327976)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (31354550..31357465)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic Neighboring gene cyclic nucleotide-gated ion channel 2 Neighboring gene early nodulin-like protein 16 Neighboring gene uncharacterized LOC4334175

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4334173
Names
26S proteasome non-ATPase regulatory subunit 10
Os03g0758400

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    32325163..32327976
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015773218.2 → XP_015628704.1  uncharacterized protein LOC4334173

    UniProtKB/TrEMBL
    B8AK75, B9F5T1, Q9AUW0
    Conserved Domains (3) summary
    PTZ00322
    Location:25 → 115
    PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
    PHA03095
    Location:72 → 240
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:94 → 125
    ANK; ANK repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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