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LOC4334195 uncharacterized LOC4334195 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334195, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4334195
Gene description
uncharacterized LOC4334195
Locus tag
OSNPB_030761700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 7.6), leaves after flowering (RPKM 6.6) and 6 other tissues See more
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Genomic context

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See LOC4334195 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (32466439..32471143)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (31495904..31500618)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g77360, mitochondrial Neighboring gene subtilisin-like protease SBT1.7 Neighboring gene probable prolyl 4-hydroxylase 9 Neighboring gene casein kinase II subunit alpha-2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC4334195
Names
Os03g0761700

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    32466439..32471143
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066309019.1 → XP_066165116.1  uncharacterized protein LOC4334195

    UniProtKB/TrEMBL
    A0A0N7KI35, A0A0P0W3S0, A2XM85, Q0DNC0, Q94H94
Nucleotide Protein
Heading Accession and Version

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