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LOC4334380 probable glutamate carboxypeptidase PLA3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334380, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4334380
Gene description
probable glutamate carboxypeptidase PLA3
Locus tag
OSNPB_030790600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
GO; PLA3
Expression
Biased expression in mature seeds (RPKM 51.4), roots before flowering (RPKM 9.6) and 2 other tissues See more
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Genomic context

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See LOC4334380 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (33830441..33838211)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (32858782..32866555)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene carboxylesterase 15 Neighboring gene uncharacterized LOC136355832 Neighboring gene LOB domain-containing protein 24-like Neighboring gene probable aldehyde oxidase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice. Kawakatsu T, et al. Plant J, 2009 Jun. PMID 19228340
  2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carboxypeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable glutamate carboxypeptidase PLA3
Names
LOC_Os03g57660
OSJNBa0087O09.17
Protein GOLIATH
Protein PLASTOCHRON3
plastochron3
probable glutamate carboxypeptidase 2
NP_001389218.1
NP_001389219.1
NP_001389220.1
NP_001389221.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402289.1 → NP_001389218.1  probable glutamate carboxypeptidase PLA3 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AB447403, AP014959, C97996, CB682305, CB684819, CI760597

  2. NM_001402290.1 → NP_001389219.1  probable glutamate carboxypeptidase PLA3 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AB447403, AP014959, CB682305, CB684819, CI163588, CI760597

  3. NM_001402291.1 → NP_001389220.1  probable glutamate carboxypeptidase PLA3 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AB447403, AK103648, AP014959, C97996, CB682305, CB684819, CI760597
    UniProtKB/Swiss-Prot
    Q0DMV8, Q10C93, Q10C95, Q852M4

  4. NM_001402292.1 → NP_001389221.1  probable glutamate carboxypeptidase PLA3 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AB447403, AK103648, AP014959, CB682305, CB684819, CI163588, CI760597

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    33830441..33838211
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q852M4.2 GenPept UniProtKB/Swiss-Prot:Q852M4

Gene LinkOut

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Molecular Biology Databases
Research Materials