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LOC4334605 receptor-like cytoplasmic kinase 176 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334605, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4334605
Gene description
receptor-like cytoplasmic kinase 176
Locus tag
OSNPB_030821900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots before flowering (RPKM 38.0), flowers (RPKM 23.7) and 6 other tissues See more
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Genomic context

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See LOC4334605 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (35476119..35480822)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (34502943..34507769)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g21065 Neighboring gene uncharacterized LOC4334604 Neighboring gene expansin-A7-like Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
receptor-like cytoplasmic kinase 176
Names
Os03g0821900
protein kinase APK1A, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    35476119..35480822
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015776449.3 → XP_015631935.1  receptor-like cytoplasmic kinase 176 isoform X1

    UniProtKB/TrEMBL
    A0A0P0W5E7
    Conserved Domains (2) summary
    smart00219
    Location:81 → 398
    TyrKc; Tyrosine kinase, catalytic domain
    cd14066
    Location:84 → 401
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

  2. XM_015776450.3 → XP_015631936.1  receptor-like cytoplasmic kinase 176 isoform X2

    UniProtKB/TrEMBL
    A0A0P0W5E7, B8AMC3, B9F709, Q10BD9
    Conserved Domains (1) summary
    cd14066
    Location:84 → 363
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
Nucleotide Protein
Heading Accession and Version

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