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LOC4334681 probable glycerol-3-phosphate acyltransferase 3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334681, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4334681
Gene description
probable glycerol-3-phosphate acyltransferase 3
Locus tag
OSNPB_030832800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in flowers (RPKM 1.4), flower buds (RPKM 1.0) and 4 other tissues See more
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Genomic context

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See LOC4334681 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (35958003..35963524)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (34985179..34990714)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124500712 Neighboring gene galactokinase Neighboring gene uncharacterized LOC4334682 Neighboring gene short-chain dehydrogenase reductase 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Glycerol-3-Phosphate Acyltransferase 3 (OsGPAT3) is required for anther development and male fertility in rice. Men X, et al. J Exp Bot, 2017 Jan 1. PMID 28082511, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycerol-3-phosphate 2-O-acyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cutin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable glycerol-3-phosphate acyltransferase 3
Names
Os03g0832800

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    35958003..35963524
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015773935.3 → XP_015629421.1  probable glycerol-3-phosphate acyltransferase 3

    UniProtKB/TrEMBL
    A0A0N7KIC3, A0A0P0W5K5, B8AMR7, Q7Y144
    Conserved Domains (1) summary
    PLN02588
    Location:58 → 537
    PLN02588; glycerol-3-phosphate acyltransferase
Nucleotide Protein
Heading Accession and Version

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