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LOC4334748 uncharacterized LOC4334748 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334748, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4334748
Gene description
uncharacterized LOC4334748
Locus tag
OSNPB_030843300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4334748 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (36414464..36416705, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (35441263..35443682, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene ras-related protein RABA2a Neighboring gene uncharacterized LOC4334747 Neighboring gene small ribosomal subunit protein bS6c Neighboring gene uncharacterized LOC4334750

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in response to desiccation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4334748
Names
Os03g0843300

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    36414464..36416705 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015774213.3 → XP_015629699.1  uncharacterized protein LOC4334748

    UniProtKB/TrEMBL
    A0A0P0W5L4, A3APM5, B8AN79, Q75LD9
    Conserved Domains (2) summary
    smart00769
    Location:61 → 155
    WHy; Water Stress and Hypersensitive response
    pfam03168
    Location:206 → 301
    LEA_2; Late embryogenesis abundant protein

  2. XM_015774214.3 → XP_015629700.1  uncharacterized protein LOC4334748

    UniProtKB/TrEMBL
    A0A0P0W5L4, A3APM5, B8AN79, Q75LD9
    Conserved Domains (2) summary
    smart00769
    Location:61 → 155
    WHy; Water Stress and Hypersensitive response
    pfam03168
    Location:206 → 301
    LEA_2; Late embryogenesis abundant protein
Nucleotide Protein
Heading Accession and Version

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