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LOC4334819 transcriptional repressor ILP1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334819, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4334819
Gene description
transcriptional repressor ILP1
Locus tag
OSNPB_030853700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4334819 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (36943807..36947263, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (35964870..35968438, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein Brevis radix-like 4 Neighboring gene uncharacterized LOC4334818 Neighboring gene uncharacterized LOC4334820 Neighboring gene protein BCCIP homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal complex disassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2-type post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcriptional repressor ILP1
Names
Os03g0853700
PAX3- and PAX7-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    36943807..36947263 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015776114.3 → XP_015631600.1  transcriptional repressor ILP1

    UniProtKB/TrEMBL
    A2XP71, A3APV6, Q84T85
    Conserved Domains (1) summary
    pfam07842
    Location:651 → 845
    GCFC; GC-rich sequence DNA-binding factor-like protein

  2. XM_015776115.3 → XP_015631601.1  transcriptional repressor ILP1

    UniProtKB/TrEMBL
    A2XP71, A3APV6, Q84T85
    Conserved Domains (1) summary
    pfam07842
    Location:651 → 845
    GCFC; GC-rich sequence DNA-binding factor-like protein
Nucleotide Protein
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