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LOC4334935 putative disease resistance RPP13-like protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334935, updated on 13-Jul-2024

Summary

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Gene symbol
LOC4334935
Gene description
putative disease resistance RPP13-like protein 1
Locus tag
OSNPB_040111900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 12.3), leaves after flowering (RPKM 10.3) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 4
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (688154..691618, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (682381..687735, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355989 Neighboring gene uncharacterized LOC4334934 Neighboring gene probable disease resistance RPP8-like protein 2 Neighboring gene transcription factor E2FC

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to other organism IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative disease resistance RPP13-like protein 1
Names
Os04g0111900
Os04g02110-like protein
putative NB-ARC domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    688154..691618 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781294.3 → XP_015636780.1  putative disease resistance RPP13-like protein 1

    UniProtKB/TrEMBL
    A0A0P0W6P6, Q01N57, Q7XQC5
    Conserved Domains (4) summary
    COG4886
    Location:563 → 683
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:592 → 614
    LRR_1; leucine-rich repeat [structural motif]
    sd00034
    Location:965 → 989
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam00931
    Location:210 → 476
    NB-ARC; NB-ARC domain
Nucleotide Protein
Heading Accession and Version

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