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LOC4334975 subtilisin-like protease SBT3.9 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334975, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4334975
Gene description
subtilisin-like protease SBT3.9
Locus tag
OSNPB_040121100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in flowers (RPKM 16.1) and flower buds (RPKM 3.1) See more
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Genomic context

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See LOC4334975 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (1332526..1344513)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (1248358..1260334)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene subtilisin-like protease SBT3.9 Neighboring gene uncharacterized LOC136355977 Neighboring gene subtilisin-like protease SBT3.14 Neighboring gene subtilisin-like protease SBT3.9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
subtilisin-like protease SBT3.9
Names
Os04g0121100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    1332526..1344513
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015779568.3 → XP_015635054.1  subtilisin-like protease SBT3.9

    UniProtKB/TrEMBL
    A3AQD6, Q01MA4, Q7XT44
    Conserved Domains (4) summary
    cd04852
    Location:113 → 569
    Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
    cd02120
    Location:346 → 470
    PA_subtilisin_like; Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, ...
    pfam05922
    Location:38 → 116
    Inhibitor_I9; Peptidase inhibitor I9
    pfam17766
    Location:643 → 740
    fn3_6; Fibronectin type-III domain
Nucleotide Protein
Heading Accession and Version

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