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LOC4335089 actin-related protein 9-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335089, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4335089
Gene description
actin-related protein 9-like
Locus tag
OSNPB_040177600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
ARP9; OsJ_013419
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Genomic context

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See LOC4335089 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (5383474..5399117, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (5291116..5306556, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene riboflavin biosynthesis protein PYRD, chloroplastic Neighboring gene uncharacterized LOC136356091 Neighboring gene syn-copalyl diphosphate synthase-like Neighboring gene 9-beta-pimara-7,15-diene oxidase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in double-strand break repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Ino80 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
actin-related protein 9
Names
LOC_Os04g09860
OSJNBa0096F01.9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419073.1 → NP_001406002.1  actin-related protein 9

    Status: VALIDATED

    Source sequence(s)
    AK105285, AU062567, AU091531, CB648632, CI408859, CI651976
    UniProtKB/TrEMBL
    A0A0P0W719

  2. NM_001419074.1 → NP_001406003.1  actin-related protein 9

    Status: VALIDATED

    Source sequence(s)
    AK105285, AU062567, CB648632, CI109216, CI408859, CI425342, CI651976
    UniProtKB/TrEMBL
    A0A0P0W719

  3. NM_001419075.1 → NP_001406004.1  actin-related protein 9

    Status: VALIDATED

    Source sequence(s)
    AK105285, AU062567, CB648632, CI148455, CI408859, CI651976
    UniProtKB/TrEMBL
    A0A0P0W719

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    5383474..5399117 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781176.3 → XP_015636662.1  actin-related protein 9 isoform X2

    UniProtKB/Swiss-Prot
    A0A0N7KIL4, A2XQX0, A3ARJ7, Q0JF03, Q7XNG4
    Conserved Domains (1) summary
    cl17037
    Location:162 → 564
    NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

  2. XM_066309149.1 → XP_066165246.1  actin-related protein 9 isoform X2

    UniProtKB/Swiss-Prot
    A0A0N7KIL4, A3ARJ7, Q0JF03, Q7XNG4

  3. XM_015781172.3 → XP_015636658.1  actin-related protein 9 isoform X1

    UniProtKB/TrEMBL
    A0A0P0W719, B8AR55
    Conserved Domains (1) summary
    cl17037
    Location:165 → 567
    NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

  4. XM_015781175.3 → XP_015636661.1  actin-related protein 9 isoform X1

    UniProtKB/TrEMBL
    A0A0P0W719, B8AR55
    Conserved Domains (1) summary
    cl17037
    Location:165 → 567
    NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0JF03.1 GenPept UniProtKB/Swiss-Prot:Q0JF03

Gene LinkOut

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