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LOC4335304 thiosulfate sulfurtransferase 16, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335304, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4335304
Gene description
thiosulfate sulfurtransferase 16, chloroplastic
Locus tag
OSNPB_040249600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in milk grains (RPKM 5.7), flower buds (RPKM 3.1) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (9870324..9873025, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (9671279..9674655, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene sucrose synthase 7-like Neighboring gene uncharacterized LOC136356019 Neighboring gene uncharacterized LOC112938685

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
thiosulfate sulfurtransferase 16, chloroplastic
Names
Os04g0249600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    9870324..9873025 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015778421.3 → XP_015633907.1  thiosulfate sulfurtransferase 16, chloroplastic

    UniProtKB/TrEMBL
    A0A0N7KIQ3, Q0JEL3
    Conserved Domains (1) summary
    cl00125
    Location:23 → 146
    RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...
Nucleotide Protein
Heading Accession and Version

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