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LOC4335314 histone H1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335314, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4335314
Gene description
histone H1
Locus tag
OSNPB_040253000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 215.5), flower buds (RPKM 199.9) and 6 other tissues See more
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Genomic context

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See LOC4335314 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (9993485..9994501)

Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene probable cleavage and polyadenylation specificity factor subunit 1 Neighboring gene probable protein transport Sec1a Neighboring gene uncharacterized LOC107280732 Neighboring gene uncharacterized LOC107280610

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosomal DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromosome condensation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone H1
Names
Os04g0253000

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

    Range
    9993485..9994501
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781730.2 → XP_015637216.1  histone H1

    UniProtKB/TrEMBL
    A2XR29, A3ARP5, B7EMI6, Q01M78, Q7XM53
    Conserved Domains (1) summary
    smart00526
    Location:31 → 97
    H15; Domain in histone families 1 and 5
Nucleotide Protein
Heading Accession and Version

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